Schedule Details
Programme
11:30 - 12:30
Thomas Simonson
Prediction of pH-dependence in the SARS-CoV-2 spike protein ectodomain
5:30pm CET, 11:30am EST, 8:30am PST
Jim Warwicker
University of Manchester (UK)
Prediction of pH-dependence in the SARS-CoV-2 spike protein ectodomain
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:30pm CET, 11:30am EST, 8:30am PST
Huan-Xiang Zhou
University of Illinois at Chicago (USA)
Correlated Segments and Fuzzy Membrane Association of Intrinsically Disordered
Proteins
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:30pm CET, 11:30am EST, 8:30am PST
Steven G. Boxer
Stanford University (USA)
Electrostatics and Enzyme Catalysis
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CET, 11:45am EST, 8:45am PST
Miguel Machuqueiro
University of Lisbon (PT)
The pH-dependent membrane crossing mechanism of Lewis bases antitumor drugs
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CET, 11:45am EST, 8:45am PST
Robert Krasny
University of Michigan (USA)
A GPU-Accelerated Fast Summation Method
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CET, 11:45am EST, 8:45am PST
Frans A.A. Mulder
Aarhus University (DK)
Accurate and individual side chain titrations curves measured by NMR
spectroscopy
Abstract
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6:00pm CET, 12:00am EST, 9:00am PST
Alexey Onufriev
Virginia Tech (USA)
Fast polarizable water model for atomistic simulations
5:45pm CET, 11:45am EST, 8:45am PST
Artemi Bendandi
Istituto Italiano di Tecnologia (IT)
Modelling Electrostatic Interactions and Solvation in Chromatin
Abstract
11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CET, 11:45am EST, 8:45am PST
Tom Laue
University of New Hampshire (USA)
Measured IgG and monovalent anion binding
Abstract
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6:00pm CET, 12:00am EST, 9:00am PST
Ana Damjanovic
Johns Hopkins University (USA)
pH and other determinants of conductance of a bacterial voltage gated sodium
channel
Abstract
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5:45pm CET, 11:45am EST, 8:45am PST
Manuel Antonio Ruíz Rodríguez
Polytechnic of Milan (IT)
Electrostatic modeling of the interaction of [NiFe] hydrogenases with graphite
electrodes
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:00pm CET, 12.00 pm EDT, 9.00 am PDT
Wei Yang
Florida State University (USA)
Understanding the Role of Large-Scale Protein dynamics in Protein Electrostatics
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:00pm CET, 12.00 pm EDT, 9.00 am PDT
Junji Iwahara
University of Texas Medical Branch (USA)
Quantifying and visualizing weak interactions between anions and proteins
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Pedro Reis
University of Lisbon (PT)
A fast and interpretable deep learning approach to electrostatics-driven pKa
predictions
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Diane L Barber
University of California San Francisco (USA)
How pH Dynamics Regulates Cell Behaviors: Bridging Protein Electrostatics and
Cell Biology
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Nicolas Foloppe
Vernalis (UK)
The reorganisation energy of drug compounds upon binding to proteins: some notes
about the electrostatics
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Thomas Simonson
Ecole Polytechnique, Paris (FR)
Computational enzyme design without Rosetta
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Marylin Gunner
City College, New York (USA)
Transmembrane proton pumps: Characterizing the protonation microstates in proton loading sites and
transfer paths.
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
António Baptista
ITQB NOVA - Institute of Chemical and Biological Technology António Xavier (Portugal)
How to address the effect of pH on protein dimerization: A constantpH MD study of beta-lactoglobulin
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Walter Rocchia
Italian Institute of Technology (Italy)
Electrostatics disguised as hydrophobicity: a new method to probe protein-ligand binding?
Abstract
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5:45pm CEST, 11:45am EDT, 8:45am PDT
Nicoletta Liguori
Vrije Universiteit Amsterdam (Netherlands)
Realtime response of photoactive (macro)molecules to pH via a novel ultrafast spectroscopy tool
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Emil Alexov
Clemson University (USA)
On the role of electrostatics in molecular recognition
Abstract
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11:30 - 12:30
Thomas Simonson
Accurate PDZ:peptide binding specificity with additive and polarizable free
energy simulations
5:45pm CEST, 11:45am EDT, 8:45am PDT
Lauren Webb
University of Texas at Austin (USA)
Experiments and Simulations of Electrostatic Fields Inside Proteins
Abstract
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On June 25 and 26 there will be the Satellite meeting, supported by CECAM, entitled:
"Advances in Electrostatic calculations: the road towards the Exascale"
The event will be co-organized by the Italian Institute of Technology and the CECAM-DE-
JUELICH node and will focus on the HPC implementation of electrostatic calculations in the
continuum and in the particle-based descriptions.
The event will be a great opportunity to mix people from the modelistic side with those from
the computational development side. This will be facilitated by the co-occurrence of the
Protein Electrostatics workshop.
The webinars will be accessible either via Zoom or via a dedicated youtube channel.
In order to access via Zoom you will need to be registered, you can do this
here.
We recently added the possibility to submit an abstract for a flash talk, which somehow
replaces the traditional poster presentation.
If you already registered only as an Attendee, you can always register again and submit an
abstract, for a regular or a flash talk.
The webinars will be followed by Q&A and by a discussion.
Those who are watching the event streamed on youtube will be able to ask written questions on
the youtube chat, once authenticated with their youtube account.
In order to make oral questions, or to participate to the discussion, you will need to be
logged on Zoom, and therefore to be registered.
For those who won’t be able to attend the Webinars, most of them will be recorded and put on
the Protein Electrostatics
Youtube channel.
In case of technical problems that would require changing the the youtube link for the
webinars, you will be able to find the updated link on this website.